Tuesday, 27 June 2017

Leukemia / Lymphoma

Leukemia / Lymphoma

Table I : cell lines with wt p53

Cell line
ATCC
Origin
Ref
J-111 AML1006
IM-9CCL-159CML-B1006
ML-1 CML 
KMS-12-BM Myeloma1006
KMS-12-PE Myeloma1006
RPMI-1788CCL156Myeloma1006
Ly3 Diffuse large cell lymphoma613
DHL4 Diffuse large cell lymphoma613
JJN-3 Myeloma98
XG-3 Myeloma98
PL-21 Myeloid Leukemia126
ALL-B ALL1303
ALL-G ALL1303
ALL-K ALL1303
NGR ALL1303
SCO-1 ALL1303
BRE ALL1303
HAU ALL1303
WMN Burkitt lymphoma447
FWL Lymphoblastoid447
NL2 Lymphoblastoid447
AG876 Burkitt lymphoma447
SHO Burkitt lymphoma447
JLP119 Burkitt lymphoma447
EW36 Burkitt lymphoma447
RehCRL-8286ALL1627
UoC-B1 ALL1627
UoC-B3 ALL1627
UoC-B4 ALL1627
UoC-B11 ALL1627
SUP-B7 ALL1627
SUP-B13 ALL1627
SUP-B15 ALL1627
EU-1 ALL1627
EU-3 ALL1627

Table II : cell lines with p53 gene deletion or rearrangement
Cell line
ATCC
Origin
HL-60CCL-240promyelocytic leukemia
EU-4 ALL

Table III : cell lines with p53 splice mutation
(exonic mutations that modify splice are listed in table IV)
no data
Table IV: cell lines with p53 mutations (missense or frameshift)
More information is available in the handbook
Pos: Codon position (1 to 393);
WT: Normal base sequence of the codon in which the mutation occurred;
Mut Sequence of the mutated codon. If the mutation is a deletion or an insertion, it is indicated by "del" or "ins" followed by the number of deleted or inserted bases. The position in the codon is indicated by “a”, “b”, or “c” for the first, second or third base of the codon respectively. Example: "del66b" is a deletion of 66 bases including the second base of the codon; "ins4a" is an insertion of 4 bases occurring between the first and the second base of the codon. Label a, b, or c is omitted if the boundary of the deletion or insertion is unknown
AA: Wild type amino acid;
Mut: Mutant amino acid. Stop: nonsense mutation: Fs.: Frameshift mutation: InF: In-frame insertion or deletion;
Comp: complexity of the mutation: SM: Single mutational event in the tumor; DMU (Double Mutation Unknown): Two p53 mutations in the same tumor but their allelique distribution is unknown; DMD (Double Mutation Different allele): Two p53 mutations in the same tumor on two different p53 alleles; DMS (Double Mutation Same allele): Two p53 mutations in the same tumor on the same p53 allele: MM (Multiple Mutation): More than two p53 mutations in the same tumor;
NB: Number of tumors with this particular mutant in the database;
Ref: reference number;
Comments: information;
Table of references (available also in the handbook)

Pos.
WT
Mut
      AA
Mut
Comp
Name
NB
Ref
Comments
Acute Myelogenous Leukemia
306CGATGAArgStopSM2L11602048from patient RUPN84. Single report
236TACCACTyrHisMMCG213356Single report
237ATGGTGMetValMMCG214356Single report
248CGGCAGArgGlnMMCG2883356Single report
133ATGAAGMetLysSMHEL131006wt in COSMIC
248CGGTGGArgTrpSMK051728243Single report
248CGGTGGArgTrpSMK052728243Single report
248CGGCAGArgGlnSMKASUMI-18832249Mutation in COSMIC database
272GTGATGValMetSMKMOE-21052249Mutation in COSMIC database
241TCCCCCSerProSMML-1112198Single report
273CGTCATArgHisSMMONOMAC-17802198Single report
241TCCdel1cSerFs.SMNOMO-142249Mutation in COSMIC database
172GTTTTTValPheDMUOHN-GM192049Single report
238TGTTATCysTyrDMUOHN-GM982049Single report
195ATCACCIleThrSMSHI-1902207Single report
288AATTATAsnTyrSMYSK-2151710Single report
B-Acute Lymphoblastic Leukemia
109TTCTCCPheSerSMALL-A31303Single report
265CTGCCGLeuProSMALL-C231303Single report
248CGGCAGArgGlnSMALL-PO8832249Mutation in COSMIC database
109TTCTCCPheSerSMALL-W31303Single report
248CGGCAGArgGlnSMEU-108831627Single report
248CGGCAGArgGlnSMEU-118831627Single report
248CGGCAGArgGlnSMEU-138831627Single report
273CGTCTTArgLeuSMEU-181471627Single report
248CGGCAGArgGlnSMEU-2883617Single report
273CGTCTTArgLeuSMEU-6147617Single report
248CGGCAGArgGlnSMEU-7883617Single report
246ATGACGMetThrSMGR-ST132249Mutation in COSMIC database
124TGCTGACysStopSMHPB-ALL12198Single report
273CGTTGTArgCysSMKARPAS-456872249Mutation in COSMIC database
224GAGins5GluFs.SMKG-11126Single report
225GTTATTValIleSMKG-1a4163Single report
177CCCTCCProSerSMKMO-9019239Single report
245GGCAGCGlySerSMKOPM30440661Single report
245GGCCGCGlyArgSMKOPN3220661Single report
257CTGGTGLeuValSMKOPN357661Single report
282CGGins2bArgFs.SMKOPN491661Single report
209AGAins4bArgFs.SMKOPN631661Single report
175CGCTGCArgCysMMSCMC-L928478Single report
248CGGCAGArgGlnMMSCMC-L9883478Single report
358GAGAAGGluLysMMSCMC-L91478Single report
246ATGACGMetThrSMTanoue132242Single report
175CGCCACArgHisSMTMBL-111871967Single report
220TATTGTTyrCysSMU-698-M3362249Mutation in COSMIC database
B-cell Leukemia
281GACGGCAspGlySMBALL-1162242Single report
248CGGCTGArgLeuSMHL-60(TB)1241018Single report
132AAGAGGLysArgSMKU812511006wt in COSMIC
285GAGAAGGluLysSMRPMI-82261651018Single report
237ATGATAMetIleSMWI-L2-NS123637Controversy with other publications
330CTTCATLeuHisSMWI-L2-NS4769Controversy with other publications
B-cell Lymphoma
280AGACGAArgArgSM211098Single report
127TCCTTCSerPheSM3301098Single report
176TGCTCCCysSerSM5131098Single report
248CGGCAGArgGlnSM68831098Single report
273CGTTGTArgCysSM86871098Single report
274GTTCTTValLeuSM9161098Single report
213CGACAAArgGlnDMDA3/KAW383Single report
234TACCACTyrHisDMDA3/KAW253Single report
283CGCCACArgHisSMDG-75191143Single report
216GTGATGValMetDMUHT742249Mutation in COSMIC database
273CGTCATArgHisDMUHT7802249Mutation in COSMIC database
158CGCCACArgHisDMULY1105613Single report
176TGCGGCCysGlyDMULY17613Single report
238TGTCGTCysArgSMLY1726613Single report
176TGCTTCCysPheSMLY2191613Single report
245GGCGACGlyAspSMLY7171613Single report
282CGGCCGArgProSMLY8 C321613Single report
B-Lineage Diffuse Large Cell Leukemia
248CGGCAGArgGlnSMDB8832249Mutation in COSMIC database
273CGTTGTArgCysSMKARPAS-2996872249Mutation in COSMIC database
319AAGTAGLysStopSMKARPAS-42252249Mutation in COSMIC database
Burkitt lymphoma
273CGTTGTArgCysSMAbana6872247Single report
190CCTdel1ProFs.SMAKATA175Single report
248CGGCAGArgGlnSMAKUA883447Single report
206TTGdel1LeuFs.SMAS283A244Single report
193CATCGTHisArgSMBJAB8675Single report
273CGTTGTArgCysSMBL-11368744Single report
246ATGACGMetThrSMBL-301375Single report
237ATGATAMetIleSMBL-3712344Single report
248CGGCAGArgGlnSMBL-4188375Single report
176TGCTACCysTyrDMUBL-498844Single report
248CGGTGGArgTrpDMUBL-4972844Single report
282CGGTGGArgTrpSMBL-6060044Single report
273CGTTGTArgCysSMBL-706872249Mutation in COSMIC database
213CGATGAArgStopSMBL-9930644Single report
248CGGCAGArgGlnSMCA46883447Single report
175CGCCACArgHisSMCW678118744Single report
213CGATGAArgStopSMDAUDI30644Controversy with other publications
266GGAGAAGlyGluSMDAUDI742249Controversy with other publications
248CGGCAGArgGlnSMDH9788831030Single report
206TTGdel1LeuFs.SMEB3244Single report
152CCGCTGProLeuDMDGA-10911819Single report
232ATCAACIleAsnDMDGA-10131819Single report
234TACTGCTyrCysSMJD3813344Confirmed in another publication
132AAGCAGLysGlnSMJIYOYE1475Confirmed in another publication
248CGGCAGArgGlnSMKK1248831007Single report
248CGGCAGArgGlnSMKK12588344Single report
238TGTTATCysTyrSMLOUCKES9875Confirmed in another publication
238TGTTATCysTyrSMMC1169844Confirmed in another publication
248CGGCAGArgGlnSMNAMALWA88375Confirmed in three other publications
163TACCACTyrHisDMUP3HR12644Confirmed in two other publications
287GAGTAGGluStopDMUP3HR11444Confirmed in two other publications
273CGTTGTArgCysSMPP98468744Single report
213CGACAAArgGlnDMDRAJI38161Confirmed in another publication Some publications described only one of the two mutations
234TACCACTyrHisDMDRAJI25161Confirmed in another publication Some publications described only one of the two mutations
254ATCGACIleAspSMRAMOS344Confirmed in three other publications
175CGCins3aArgInFSMSG5681447Single report
158CGCCACArgHisSMST48610544Consensus based on three puublications. Controversy with other publications Second mutation found by COSMIC
158CGCCACArgHisDMUST4861052249Controversy with other publications. Excluded from the consensus
239AACGACAsnAspDMUST486532249Controversy with other publications. Excluded from the consensus
Chronic Myelocytic Leukemia
289CTCCACLeuHisSMCG32356Single report
136CAAins1aGlnFs.SMK-5621269Confirmed in another publication
301CCADEL1ProFs.SMKCL-222150Single report
248CGGCAGArgGlnSMKYO-1883150Single report
319AAGTAGLysStopSMLAMA-8452249Mutation in COSMIC database
Erythroleukemia
274GTTGATValAspSMOCIM2812Single report
Hodgkin disease
175CGCCACArgHisDMDCO118755Single report
282CGGTGGArgTrpDMDCO60055Single report
232ATCdel11cIleFs.SMHD-MY-Z12249Mutation in COSMIC database
Lymphoid leukemia
273CGTTGTArgCysSMRPMI-8402687163Single report
Mantle Cell Lymphoma
147GTTGGTValGlySMMino81842Single report
Merkel cell carcinoma
241TCCTTTSerPheDMUMCC1362088Single report
278CCTTCTProSerDMUMCC13872088Single report
272GTGGAGValGluSMMCC14/2122088Single report
Multiple Myeloma
255ATCdel6bIleInFSMMEF-121363Single report
Myelodysplastic synd.
248CGGCAGArgGlnSMSKM-18831363Single report
Myeloid leukemia
175CGCCACArgHisSMKY8211187126wt in COSMIC
251ATCDEL1BIleFs.SMTF-15126Single report
174AGGDEL26AArgFs.SMTHP-11126Confirmed in another publication
172GTTDEL46AValFs.SMU9372126Single report
261AGTDEL99ASerInFSMUT71126Single report
Myeloma
273CGTCATArgHisSMARH-777802249Mutation in COSMIC database
132AAGAACLysAsnSMEJM3398Single report
143GTGATGValMetSMHD-70341004Single report
337CGCCTCArgLeuSMKMS-12-PE92249Mutation in COSMIC database
261AGTACTSerThrSML-36312249Mutation in COSMIC database
184GATTATAspTyrSMLB 831598Single report
286GAAAAAGluLysSMLP-1862249Mutation in COSMIC database
285GAGAAGGluLysSMRPMI-822616598Single report
161GCCACCAlaThrSMU2667598Single report
126TACAACTyrAsnSMXG-1698Single report
176TGCTACCysTyrSMXG-28898Single report
181CGCTGCArgCysSMXG-42898Single report
282CGGTGGArgTrpSMXG-560098Single report
NK-Leukemia
248CGGTGGArgTrpSMKHYG-17281125Single report
Non-Hodgkin's Lymphomas
237ATGATAMetIleDMDOCI-Ly4123517Single report
248CGGCAGArgGlnDMDOCI-Ly4883517Single report
248CGGCAGArgGlnSMWSU-NHL8832249Mutation in COSMIC database
T-cell Acute Lymphoblastic Leukemia
37TCCCCCSerProMMCCRF-CEM-VLB10011703Single report
175CGCCACArgHisMMCCRF-CEM-VLB10011871703Single report
248CGGCAGArgGlnMMCCRF-CEM-VLB1008831703Single report
196CGATGAArgStopDMUJ-RT3-T3-52412249Mutation in COSMIC database
360GGGdel1aGlyFs.DMUJ-RT3-T3-522249Mutation in COSMIC database
196CGATGAArgStopMMJURKAT2413Single report
256ACAGCAThrAlaMMJURKAT93Single report
259GACGGCAspGlyMMJURKAT63Single report
260TCCGCCSerAlaMMJURKAT43Single report
272GTGATGValMetSMLoucy1051510Single report
273CGTCATArgHisSMMOLT-137802249Mutation in COSMIC database
237ATGAGGMetArgDMUMOLT-1683wt in COSMIC
244GGCTGCGlyCysDMUMOLT-16533wt in COSMIC
111CTGGTGLeuValSMMOLT-412242Controversy with other publications
248CGGCAGArgGlnSMMOLT-488327Controversy with other publications
306CGATGAArgStopSMMOLT-41602249Controversy with other publications
11GAGCAGGluGlnMMP12-ICHIKAWA102249Mutation in COSMIC database
248CGGCCGArgProMMP12-ICHIKAWA232249Mutation in COSMIC database
248CGGCAGArgGlnMMP12-ICHIKAWA8832249Mutation in COSMIC database
273CGTTGTArgCysSMPF-3826872249Mutation in COSMIC database
248CGGCAGArgGlnMMSUP-T18832249Mutation in COSMIC database
267CGGCTGArgLeuMMSUP-T112249Mutation in COSMIC database
273CGTCATArgHisMMSUP-T17802249Mutation in COSMIC database
T-cell leukemia
278CCTTCTProSerSMATL1K8782Single report
175CGCGGCArgGlySMHATL27323Single report
176TGCTACCysTyrSMMT18882Single report
T-cell Lymphoma
196CGATGAArgStopSMHUT782413Single report
 

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