Tuesday, 27 June 2017

Cervical cancer

Cervical cancer

Table I : cell lines with wt p53
Cell lineATCC
Reference
HeLa*CCL-2
1006
ME-180*HTB-33
1006
SKG-IIIa* 
1006
SW756*CRL-10302
2249
CA-SKI*CRL-1550
2249
SIHA*HTB-35
2249
KB*CCL-17
2249
MS-715*HTB-34
68
C4II*CRL-1595
68
SKG-II* 
* HPV positive
Table II : cell lines with p53 gene deletion or rearrangement
no data
Table III : cell lines with p53 splice mutation
(exonic mutations that modify splice are listed in table IV)
no data
Table IV: cell lines with p53 mutations (missense or frameshift)
More information is available in the handbook
Pos: Codon position (1 to 393);
WT: Normal base sequence of the codon in which the mutation occurred;
Mut Sequence of the mutated codon. If the mutation is a deletion or an insertion, it is indicated by "del" or "ins" followed by the number of deleted or inserted bases. The position in the codon is indicated by “a”, “b”, or “c” for the first, second or third base of the codon respectively. Example: "del66b" is a deletion of 66 bases including the second base of the codon; "ins4a" is an insertion of 4 bases occurring between the first and the second base of the codon. Label a, b, or c is omitted if the boundary of the deletion or insertion is unknown
AA: Wild type amino acid;
Mut: Mutant amino acid. Stop: nonsense mutation: Fs.: Frameshift mutation: InF: In-frame insertion or deletion;
Comp: complexity of the mutation: SM: Single mutational event in the tumor; DMU (Double Mutation Unknown): Two p53 mutations in the same tumor but their allelique distribution is unknown; DMD (Double Mutation Different allele): Two p53 mutations in the same tumor on two different p53 alleles; DMS (Double Mutation Same allele): Two p53 mutations in the same tumor on the same p53 allele: MM (Multiple Mutation): More than two p53 mutations in the same tumor;
NB: Number of tumors with this particular mutant in the database;
Ref: reference number;
Comments: information;
Table of references (available also in the handbook)
Pos.
WT
Mut
      AA
Mut
Comp
Name
NB
Ref
Comments
109
TTC
TTA
Phe
Leu
SM
C2
1
469
Single report
273
CGT
TGT
Arg
Cys
SM
C33A
687
54
Confirmed in two other publications
245
GGC
GTC
Gly
Val
SM
HT-3
84
54
Confirmed in another publication
175
CGC
CAC
Arg
His
SM
IGR/Cut40
1187
573
Single report
131
AAC
del3a
Asn
InF
SM
SKS
7
1782
Single report





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