Tuesday, 27 June 2017

Cell lines with a controversial p53 status

Cell lines with a controversial p53 status

Pos: Codon position (1 to 393);
WT: Normal base sequence of the codon in which the mutation occurred;
Mut Sequence of the mutated codon. If the mutation is a deletion or an insertion, it is indicated by "del" or "ins" followed by the number of deleted or inserted bases. The position in the codon is indicated by “a”, “b”, or “c” for the first, second or third base of the codon respectively. Example: "del66b" is a deletion of 66 bases including the second base of the codon; "ins4a" is an insertion of 4 bases occurring between the first and the second base of the codon. Label a, b, or c is omitted if the boundary of the deletion or insertion is unknown
AA: Wild type amino acid;
Mut: Mutant amino acid. Stop: nonsense mutation: Fs.: Frameshift mutation: InF: In-frame insertion or deletion;
Comp: complexity of the mutation: SM: Single mutational event in the tumor; DMU (Double Mutation Unknown): Two p53 mutations in the same tumor but their allelique distribution is unknown; DMD (Double Mutation Different allele): Two p53 mutations in the same tumor on two different p53 alleles; DMS (Double Mutation Same allele): Two p53 mutations in the same tumor on the same p53 allele: MM (Multiple Mutation): More than two p53 mutations in the same tumor;
NB: Number of tumors with this particular mutant in the database;
Ref: reference number;
Comments: information;
More information is available in the handbook
Table of references (available also in the handbook)

Pos.
WT
Mut
      AA
Mut
Comp
Name
NB
Cancer
Ref
Comments
237ATGATAMetIleSMWI-L2-NS123B-cell Leukemia637Controversy with other publications
330CTTCATLeuHisSMWI-L2-NS4B-cell Leukemia769Controversy with other publications
126TACTAGTyrStopSMEJ14Bladder carcinoma689Controversy with other publications
164AAGGAGLysGluSMEJ25Bladder carcinoma729Controversy with other publications
76GCAdel76AlaFs.SMFHS 738B11Bladder carcinoma561Single report
365CACCGCHisArgSMHT-11971Bladder carcinoma561wt in COSMIC
250CCCCTCProLeuSMHT-137653Bladder carcinoma561Confirmed in two other publications
261AGTdel137SerFs.DMUJ821Bladder carcinoma2249Controversy with other publications Deletion of exon 8
271GAGAAGGluLysMMJ8238Bladder carcinoma561Controversy with other publications undocumented 4th mutation (deletion 210 bp)
271GAGAAGGluLysMMJ8238Bladder carcinoma729Controversy with other publications
274GTTTTTValPheMMJ8232Bladder carcinoma561Controversy with other publications undocumented 4th mutation (deletion 210 bp)
274GTTTTTValPheMMJ8232Bladder carcinoma729Controversy with other publications
320AAGAACLysAsnMMJ825Bladder carcinoma561Controversy with other publications undocumented 4th mutation (deletion 210 bp)
320AAGAACLysAsnDMUJ825Bladder carcinoma2249Controversy with other publications
320AAGAACLysAsnMMJ825Bladder carcinoma729Controversy with other publications
183TCATGASerStopDMURT-11229Bladder carcinoma2249Controversy with other publications
248CGGCAGArgGlnSMRT-112883Bladder carcinoma1733Controversy with other publications
248CGGCAGArgGlnDMURT-112883Bladder carcinoma2249Controversy with other publications
110CGTCTTArgLeuSMSD28Bladder carcinoma294Controversy with other publications
116TCTTGTSerCysSMSD3Bladder carcinoma689Controversy with other publications
126TACTAGTyrStopSMT-2414Bladder carcinoma689Controversy with other publications
126TACdel3aTyrInFSMT-241Bladder carcinoma561Controversy with other publications
126TACTAGTyrStopDMUVM-CUB-114Bladder carcinoma2249Controversy with other publications
175CGCCACArgHisSMVM-CUB-11187Bladder carcinoma689Controversy with other publications
175CGCCACArgHisDMUVM-CUB-11187Bladder carcinoma2249Controversy with other publications
158CGCCTCArgLeuDMUVM-CUB-292Bladder carcinoma689Controversy with other publications
158CGCCTCArgLeuSMVM-CUB-292Bladder carcinoma294Controversy with other publications
163TACTGCTyrCysDMUVM-CUB-2140Bladder carcinoma689Controversy with other publications
246ATGdel1cMetFs.SMBT-4831Breast carcinoma2029Controversy with other publications
246ATGATAMetIleSMBT-48333Breast carcinoma2091Controversy with other publications
204GAGins7cGluFs.SMMDA-MB-4361Breast carcinoma2029Controversy with other publications
273CGTCATArgHisSMMDA-MB-436780Breast carcinoma1367Controversy with other publications
213CGATGAArgStopSMDAUDI306Burkitt lymphoma44Controversy with other publications
266GGAGAAGlyGluSMDAUDI74Burkitt lymphoma2249Controversy with other publications
158CGCCACArgHisSMST486105Burkitt lymphoma44Consensus based on three puublications. Controversy with other publications Second mutation found by COSMIC
158CGCCACArgHisDMUST486105Burkitt lymphoma2249Controversy with other publications. Excluded from the consensus
239AACGACAsnAspDMUST48653Burkitt lymphoma2249Controversy with other publications. Excluded from the consensus
234TACTGCTyrCysSMCaR-1133Colorectal carcinoma1006Controversy with other publications. wt in COSMIC
272GTGATGValMetSMCaR-1105Colorectal carcinoma2051Controversy with other publications. wt in COSMIC
103TACdel27TyrInFSMCOLO-2051Colorectal carcinoma492Controversy with other publications
266GGAGAAGlyGluSMCOLO-20574Colorectal carcinoma1018Controversy with other publications
153CCCGCCProAlaSMHCT-155Colorectal carcinoma1018Controversy with other publications
241TCCTTCSerPheSMHCT-15101Colorectal carcinoma2251Controversy with other publications
72CCCdel1bProFs.SMKM121Colorectal carcinoma2249Controversy with other publications
179CATCGTHisArgSMKM12146Colorectal carcinoma1018Controversy with other publications
156CGCdel1aArgFs.DMURL95-23Endometrial tumor1625Controversy with other publications
218GTGdel3ValInFSMRL95-22Endometrial tumor64Controversy with other publications
218GTGdel3aValInFDMURL95-23Endometrial tumor1625Controversy with other publications
179CATCGTHisArgSMKYSE-450146Esophageal SCC634Controversy with other publications
339GAGTAGGluStopSMKYSE-45012Esophageal SCC2249Controversy with other publications
241TCCdel32cSerFs.SMKYSE-5101Esophageal SCC634Controversy with other publications
343GAGTAGGluStopSMKYSE-5105Esophageal SCC2249Controversy with other publications
110CGTCTTArgLeuSMTE-1128Esophageal SCC1006Controversy with other publications. wt in COSMIC
237ATGATTMetIleSMTE-1152Esophageal SCC1144Controversy with other publications. wt in COSMIC
251ATCCTCIleLeuDMUMKN-745Gastric carcinoma1006Controversy with other publications. wt in COSMIC
251ATCCTCIleLeuSMMKN-745Gastric carcinoma94Controversy with other publications. wt in COSMIC
271GAGGCGGluAlaDMUMKN-743Gastric carcinoma1006Controversy with other publications. wt in COSMIC
342CGAdel1aArgFs.SMSF-5395Gliomas2249Controversy with other publications
277TGTdel30CysInFSMUM-SCC-142Head and Neck SCC1019Controversy with other publications
277TGTdel30CysInFDMUUM-SCC-142Head and Neck SCC1636Controversy with other publications
280AGAAGTArgSerDMUUM-SCC-1414Head and Neck SCC1636Controversy with other publications
244GGCGCCGlyAlaSMHLE10Hepatocellular carcinoma1069Controversy with other publications
249AGGAGCArgSerSMHLE34Hepatocellular carcinoma230Controversy with other publications
272GTGATGValMetSMHLE105Hepatocellular carcinoma1006Controversy with other publications
237ATGAAGMetLysDMUSK-LMS-111Leyomyosarcoma2198Controversy with other publications
245GGCAGCGlySerSMSK-LMS-1440Leyomyosarcoma14Controversy with other publications
245GGCAGCGlySerDMUSK-LMS-1440Leyomyosarcoma2198Controversy with other publications
175CGCCACArgHisDMUSK-UT-11187Leyomyosarcoma2249Controversy with other publications
175CGCCACArgHisSMSK-UT-11187Leyomyosarcoma14Controversy with other publications
248CGGCAGArgGlnDMUSK-UT-1883Leyomyosarcoma2249Controversy with other publications
187GGTdel111GlyInFSMEKVX1Lung (NSCLC)1018Controversy with other publications
203GTGGTTValValSMEKVX2Lung (NSCLC)2249Controversy with other publications
204GAGTAGGluStopSMEKVX46Lung (NSCLC)2249Controversy with other publications
47CCGCTGProLeuSMNCI-H13733Lung (NSCLC)106Controversy with other publications
34CCCins1ProFs.DMUNCI-H1571Lung (NSCLC)1382Controversy with other publications
282CGGCCGArgProSMNCI-H15721Lung (NSCLC)2021Controversy with other publications
298GAGTAGGluStopSMNCI-H15771Lung (NSCLC)92Controversy with other publications
298GAGTAGGluStopDMUNCI-H15771Lung (NSCLC)1382Controversy with other publications
285GAGAAGGluLysSMNCI-H1703165Lung (NSCLC)92Controversy with other publications
209AGATGAArgStopSMNCI-H179314Lung (NSCLC)92Controversy with other publications
273CGTCATArgHisSMNCI-H1793780Lung (NSCLC)2249Controversy with other publications
158CGCCTCArgLeuSMNCI-H22692Lung (NSCLC)92Controversy with other publications
309CCCGCCProAlaSMNCI-H2261Lung (NSCLC)1018Controversy with other publications
249AGGAGCArgSerSMNCI-H32434Lung (NSCLC)678Controversy with other publications
249AGGAGCArgSerDMUNCI-H32434Lung (NSCLC)92Controversy with other publications
259GACGTCAspValDMUNCI-H32421Lung (NSCLC)92Controversy with other publications
248CGGTGGArgTrpSMPC-14728Lung (NSCLC)1382Controversy with other publications
248CGGCAGArgGlnSMPC-14883Lung (NSCLC)2242Controversy with other publications
280AGAAAAArgLysSMSK-MES-178Lung (NSCLC)1081Controversy with other publications. Excluded from the cosnensus
298GAGTAGGluStopSMSK-MES-171Lung (NSCLC)303Consensus based on three publications. Controversy with other publications
46TCCdel1bSerFs.DMUNCI-H10481Lung (SCLC)2249Controversy with other publications
273CGTTGTArgCysSMNCI-H1048687Lung (SCLC)22Controversy with other publications
273CGTTGTArgCysDMUNCI-H1048687Lung (SCLC)2249Controversy with other publications
258GAAAAAGluLysDMUMeWo73Melanoma2249Controversy with other publications
258GAAAAAGluLysSMMeWo73Melanoma1076Controversy with other publications
317CAGTAGGlnStopDMUMeWo25Melanoma2249Controversy with other publications
341TTCTTTPhePheSMMeWo4Melanoma2019Controversy with other publications
342CGATGAArgStopSMMeWo74Melanoma2019Controversy with other publications
239AACGACAsnAspSMPA-153Ovarian carcinoma854Controversy with other publications. wt in COSMIC
316CCCCCTProProSMPA-16Ovarian carcinoma144Controversy with other publications. wt in COSMIC
89CCCdel1aProFs.SMSK-OV-33Ovarian carcinoma2249Controversy with other publications
179CATCGTHisArgSMSK-OV-3146Ovarian carcinoma1018Controversy with other publications
262GGTGTTGlyValSMSW62614Ovarian carcinoma864Controversy with other publications
273CGTCATArgHisSMSW626780Ovarian carcinoma1011Controversy with other publications
134TTTdel1aPheFs.SMAsPC-14Pancreatic cancer397Consensus based on four publications. Controversy with other publications
273CGTCATArgHisSMASPC-1780Pancreatic cancer132Controversy with other publications. Excluded from the consensus
273CGTCATArgHisSMPanc-1780Pancreatic cancer178Consensus based on four publications. Controversy with one publication
273CGTTGTArgCysSMPanc-1687Pancreatic cancer177Controversy with other publications. Excluded from the cosnensus
223CCTCTTProLeuDMDDU-1455Prostate ca.59Consensus based on three publications. Controvery withy other publications (only one of the two mutations is found)
274GTTTTTValPheDMDDU-14532Prostate ca.59Consensus based on three publications. Controvery withy other publications (only one of the two mutations is found)
278CCTGCTProAlaDMU786-024Renal cell ca.1018Controversy with other publications. Splice in COSMIC
273CGTTGTArgCysSMRh30687Rhabdomyosarcoma1190Controversy with other publications
280AGAAGTArgSerSMRH3014Rhabdomyosarcoma97Controversy with other publications
111CTGGTGLeuValSMMOLT-41T-cell Acute Lymphoblastic Leu2242Controversy with other publications
248CGGCAGArgGlnSMMOLT-4883T-cell Acute Lymphoblastic Leu27Controversy with other publications
306CGATGAArgStopSMMOLT-4160T-cell Acute Lymphoblastic Leu2249Controversy with other publications

 

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